Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Nrip3 ENSMUSG00000034825

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Description

nuclear receptor interacting protein 3 [Source:MGI Symbol;Acc:MGI:1925843]

Gene Synonyms

A330103B05Rik, D7H11orf14, ICRFP703B1614Q5.2, ICRFP703N2430Q5.2

Location

Chromosome 7: 109,357,262-109,381,232 reverse strand.

GRCm39:CM001000.3

About this gene

This gene has 6 transcripts (splice variants), 168 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000033331.7	Nrip3-201	3910	240aa	ENSMUSP00000033331.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21739	Q9JJR9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000041460.13	Nrip3-202	3927	251aa	ENSMUSP00000044116.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6GQT2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000515694.1	Nrip3-205	2048	262aa	ENSMUSP00000294057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000207400.2	Nrip3-203	338	89aa	ENSMUSP00000147090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LJ62	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000515693.1	Nrip3-204	3917	190aa	ENSMUSP00000294056.1	Nonsense mediated decay		-	-
ENSMUST00000515695.1	Nrip3-206	3667	68aa	ENSMUSP00000294058.1	Nonsense mediated decay		-	-

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Summary

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