Gene: Gcsh ENSMUSG00000034424

Description

glycine cleavage system protein H (aminomethyl carrier) [Source:MGI Symbol;Acc:MGI:1915383]

Gene Synonyms

1100001L02Rik, 5730591C18Rik

Location

Chromosome 8: 117,708,549-117,720,320 reverse strand.

GRCm39:CM001001.3

About this gene

This gene has 23 transcripts (splice variants), 226 orthologues and is associated with 18 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000040484.6	Gcsh-201	1443	170aa	ENSMUSP00000037131.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22696	Q91WK5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000383938.1	Gcsh-212	1485	184aa	ENSMUSP00000162301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000578627.1	Gcsh-223	1419	162aa	ENSMUSP00000356990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000383935.1	Gcsh-209	1383	150aa	ENSMUSP00000162298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000563473.1	Gcsh-218	1359	142aa	ENSMUSP00000341836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000383937.1	Gcsh-211	1311	126aa	ENSMUSP00000162300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000383932.1	Gcsh-206	1487	97aa	ENSMUSP00000162295.1	Nonsense mediated decay		-	-
ENSMUST00000563471.1	Gcsh-216	1485	62aa	ENSMUSP00000341834.1	Nonsense mediated decay		-	-
ENSMUST00000383936.1	Gcsh-210	1428	64aa	ENSMUSP00000162299.1	Nonsense mediated decay		-	-
ENSMUST00000383929.1	Gcsh-203	1389	55aa	ENSMUSP00000162292.1	Nonsense mediated decay		-	-
ENSMUST00000563477.1	Gcsh-222	1381	49aa	ENSMUSP00000341840.1	Nonsense mediated decay		-	-
ENSMUST00000383934.1	Gcsh-208	1376	54aa	ENSMUSP00000162297.1	Nonsense mediated decay		-	-
ENSMUST00000563475.1	Gcsh-220	1364	64aa	ENSMUSP00000341838.1	Nonsense mediated decay		-	-
ENSMUST00000383931.1	Gcsh-205	1363	62aa	ENSMUSP00000162294.1	Nonsense mediated decay		-	-
ENSMUST00000563474.1	Gcsh-219	1309	62aa	ENSMUSP00000341837.1	Nonsense mediated decay		-	-
ENSMUST00000383930.1	Gcsh-204	1292	106aa	ENSMUSP00000162293.1	Nonsense mediated decay		-	-
ENSMUST00000563468.1	Gcsh-213	1278	105aa	ENSMUSP00000341831.1	Nonsense mediated decay		-	-
ENSMUST00000383933.1	Gcsh-207	1275	89aa	ENSMUSP00000162296.1	Nonsense mediated decay		-	-
ENSMUST00000563470.1	Gcsh-215	1268	102aa	ENSMUSP00000341833.1	Nonsense mediated decay		-	-
ENSMUST00000563469.1	Gcsh-214	1243	70aa	ENSMUSP00000341832.1	Nonsense mediated decay		-	-
ENSMUST00000563476.1	Gcsh-221	1219	89aa	ENSMUSP00000341839.1	Nonsense mediated decay		-	-
ENSMUST00000563472.1	Gcsh-217	1177	55aa	ENSMUSP00000341835.1	Nonsense mediated decay		-	-
ENSMUST00000162548.2	Gcsh-202	384	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Gene: Gcsh ENSMUSG00000034424

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Gene: Gcsh ENSMUSG00000034424

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