Gene: Gde1 ENSMUSG00000033917

Description

glycerophosphodiester phosphodiesterase 1 [Source:MGI Symbol;Acc:MGI:1891827]

Gene Synonyms

1200003M13Rik, MIR16

Location

Chromosome 7: 118,287,768-118,305,001 reverse strand.

GRCm39:CM001000.3

About this gene

This gene has 4 transcripts (splice variants), 249 orthologues, 5 paralogues and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000038791.15	Gde1-201	1582	331aa	ENSMUSP00000046371.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21774	Q9JL56	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000132509.4	Gde1-202	737	186aa	ENSMUSP00000122015.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z3E2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000207323.2	Gde1-203	433	107aa	ENSMUSP00000147236.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LJJ4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000208040.2	Gde1-204	923	108aa	ENSMUSP00000147251.2	Nonsense mediated decay		A0A140LJK8	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Gene: Gde1 ENSMUSG00000033917

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Gene: Gde1 ENSMUSG00000033917

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