Gene: Colgalt2 ENSMUSG00000032649

Description

collagen beta(1-O)galactosyltransferase 2 [Source:MGI Symbol;Acc:MGI:2138232]

Gene Synonyms

Glt25d2

Location

Chromosome 1: 152,275,581-152,386,939 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 12 transcripts (splice variants), 242 orthologues, 5 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044311.10	Colgalt2-201	4586	625aa	ENSMUSP00000037532.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15364	Q6NVG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000535016.1	Colgalt2-205	4584	534aa	ENSMUSP00000313379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000535022.1	Colgalt2-211	4451	580aa	ENSMUSP00000313385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000535015.1	Colgalt2-204	4325	538aa	ENSMUSP00000313378.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000535014.1	Colgalt2-203	4659	124aa	ENSMUSP00000313377.1	Nonsense mediated decay		-	-
ENSMUST00000535019.1	Colgalt2-208	4524	124aa	ENSMUSP00000313382.1	Nonsense mediated decay		-	-
ENSMUST00000535018.1	Colgalt2-207	4138	470aa	ENSMUSP00000313381.1	Nonsense mediated decay		-	-
ENSMUST00000535020.1	Colgalt2-209	4119	88aa	ENSMUSP00000313383.1	Nonsense mediated decay		-	-
ENSMUST00000535017.1	Colgalt2-206	4082	88aa	ENSMUSP00000313380.1	Nonsense mediated decay		-	-
ENSMUST00000535021.1	Colgalt2-210	4018	159aa	ENSMUSP00000313384.1	Nonsense mediated decay		-	-
ENSMUST00000127586.8	Colgalt2-202	3368	469aa	ENSMUSP00000119210.2	Nonsense mediated decay		D6RCH2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000535023.1	Colgalt2-212	3287	86aa	ENSMUSP00000313386.1	Nonsense mediated decay		-	-

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Gene: Colgalt2 ENSMUSG00000032649

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Gene: Colgalt2 ENSMUSG00000032649

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