Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Gla ENSMUSG00000031266

.

Description

galactosidase, alpha [Source:MGI Symbol;Acc:MGI:1347344]

Gene Synonyms

Ags

Location

Chromosome X: 133,488,891-133,501,904 reverse strand.

GRCm39:CM001013.3

About this gene

This gene has 8 transcripts (splice variants), 197 orthologues, 1 paralogue and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239113.3	Gla-203	3209	421aa	ENSMUSP00000159121.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41124	Q8BGZ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSMUST00000033621.9	Gla-201	3179	419aa	ENSMUSP00000033621.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P51569	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000448740.1	Gla-204	3017	355aa	ENSMUSP00000227103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000153024.2	Gla-202	337	77aa	ENSMUSP00000123098.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2BDV6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000557790.1	Gla-206	2927	234aa	ENSMUSP00000336153.1	Nonsense mediated decay		-	-
ENSMUST00000448741.1	Gla-205	1401	267aa	ENSMUSP00000227104.1	Nonsense mediated decay		-	-
ENSMUST00000557791.1	Gla-207	1311	198aa	ENSMUSP00000336154.1	Nonsense mediated decay		-	-
ENSMUST00000557792.1	Gla-208	1021	66aa	ENSMUSP00000336155.1	Nonsense mediated decay		-	-

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Summary

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