Gene: Hoxa1 ENSMUSG00000029844

Description

homeobox A1 [Source:MGI Symbol;Acc:MGI:96170]

Gene Synonyms

ERA1, Hox-1.6, early retinoic acid

Location

Chromosome 6: 52,132,570-52,135,297 reverse strand.

GRCm39:CM000999.3

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues, 42 paralogues and is associated with 96 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000000964.6	Hoxa1-201	2251	336aa	ENSMUSP00000000964.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20138	B9EHK7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000120363.2	Hoxa1-202	2043	138aa	ENSMUSP00000113724.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS80534	D3Z4E1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Hoxa1 ENSMUSG00000029844

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Gene: Hoxa1 ENSMUSG00000029844

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