Gene: Trit1 ENSMUSG00000028653

Description

tRNA isopentenyltransferase 1 [Source:MGI Symbol;Acc:MGI:1914216]

Gene Synonyms

2310075G14Rik, MOD5

Location

Chromosome 4: 122,910,335-122,948,766 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 26 transcripts (splice variants), 213 orthologues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000102649.5	Trit1-201	2108	467aa	ENSMUSP00000099709.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18607	Q80UN9-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000514619.1	Trit1-212	1883	392aa	ENSMUSP00000292982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000514614.1	Trit1-207	1853	382aa	ENSMUSP00000292977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000514625.1	Trit1-218	1166	153aa	ENSMUSP00000292988.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000514615.1	Trit1-208	4659	189aa	ENSMUSP00000292978.1	Nonsense mediated decay		-	-
ENSMUST00000564019.1	Trit1-224	2668	124aa	ENSMUSP00000342382.1	Nonsense mediated decay		-	-
ENSMUST00000564020.1	Trit1-225	2556	124aa	ENSMUSP00000342383.1	Nonsense mediated decay		-	-
ENSMUST00000514622.1	Trit1-215	2217	61aa	ENSMUSP00000292985.1	Nonsense mediated decay		-	-
ENSMUST00000514620.1	Trit1-213	2156	139aa	ENSMUSP00000292983.1	Nonsense mediated decay		-	-
ENSMUST00000564017.1	Trit1-222	2072	290aa	ENSMUSP00000342380.1	Nonsense mediated decay		-	-
ENSMUST00000514621.1	Trit1-214	1958	290aa	ENSMUSP00000292984.1	Nonsense mediated decay		-	-
ENSMUST00000514624.1	Trit1-217	1942	234aa	ENSMUSP00000292987.1	Nonsense mediated decay		-	-
ENSMUST00000564016.1	Trit1-221	1933	189aa	ENSMUSP00000342379.1	Nonsense mediated decay		-	-
ENSMUST00000514617.1	Trit1-210	1868	273aa	ENSMUSP00000292980.1	Nonsense mediated decay		-	-
ENSMUST00000514612.1	Trit1-205	1856	189aa	ENSMUSP00000292975.1	Nonsense mediated decay		-	-
ENSMUST00000564015.1	Trit1-220	1838	189aa	ENSMUSP00000342378.1	Nonsense mediated decay		-	-
ENSMUST00000514623.1	Trit1-216	1775	139aa	ENSMUSP00000292986.1	Nonsense mediated decay		-	-
ENSMUST00000514618.1	Trit1-211	1754	274aa	ENSMUSP00000292981.1	Nonsense mediated decay		-	-
ENSMUST00000514613.1	Trit1-206	1741	189aa	ENSMUSP00000292976.1	Nonsense mediated decay		-	-
ENSMUST00000514616.1	Trit1-209	1728	188aa	ENSMUSP00000292979.1	Nonsense mediated decay		-	-
ENSMUST00000514626.1	Trit1-219	1660	139aa	ENSMUSP00000292989.1	Nonsense mediated decay		-	-
ENSMUST00000564018.1	Trit1-223	1587	188aa	ENSMUSP00000342381.1	Nonsense mediated decay		-	-
ENSMUST00000564021.1	Trit1-226	1301	62aa	ENSMUSP00000342384.1	Nonsense mediated decay		-	-
ENSMUST00000514611.1	Trit1-204	1261	62aa	ENSMUSP00000292974.1	Nonsense mediated decay		-	-
ENSMUST00000147165.8	Trit1-203	1964	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000141855.2	Trit1-202	512	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Gene: Trit1 ENSMUSG00000028653

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Gene: Trit1 ENSMUSG00000028653

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