Gene: Cth ENSMUSG00000028179

Description

cystathionine gamma lyase [Source:MGI Symbol;Acc:MGI:1339968]

Gene Synonyms

0610010I13Rik, CSE

Location

Chromosome 3: 157,599,868-157,630,739 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 28 transcripts (splice variants), 222 orthologues and is associated with 41 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000118539.3	Cth-201	1820	398aa	ENSMUSP00000113672.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51101	Q8VCN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000517408.1	Cth-215	1859	411aa	ENSMUSP00000295771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000517409.1	Cth-216	1847	407aa	ENSMUSP00000295772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000517406.1	Cth-213	1760	378aa	ENSMUSP00000295769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000517401.1	Cth-208	1688	354aa	ENSMUSP00000295764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000517399.1	Cth-206	1532	302aa	ENSMUSP00000295762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000561844.1	Cth-221	1520	298aa	ENSMUSP00000340207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000561847.1	Cth-224	3121	63aa	ENSMUSP00000340210.1	Nonsense mediated decay		-	-
ENSMUST00000517398.1	Cth-205	2043	198aa	ENSMUSP00000295761.1	Nonsense mediated decay		-	-
ENSMUST00000561846.1	Cth-223	1945	55aa	ENSMUSP00000340209.1	Nonsense mediated decay		-	-
ENSMUST00000517400.1	Cth-207	1938	69aa	ENSMUSP00000295763.1	Nonsense mediated decay		-	-
ENSMUST00000517404.1	Cth-211	1891	62aa	ENSMUSP00000295767.1	Nonsense mediated decay		-	-
ENSMUST00000517407.1	Cth-214	1872	351aa	ENSMUSP00000295770.1	Nonsense mediated decay		-	-
ENSMUST00000561849.1	Cth-226	1828	68aa	ENSMUSP00000340212.1	Nonsense mediated decay		-	-
ENSMUST00000561842.1	Cth-219	1822	358aa	ENSMUSP00000340205.1	Nonsense mediated decay		-	-
ENSMUST00000561841.1	Cth-218	1821	125aa	ENSMUSP00000340204.1	Nonsense mediated decay		-	-
ENSMUST00000517402.1	Cth-209	1799	201aa	ENSMUSP00000295765.1	Nonsense mediated decay		-	-
ENSMUST00000517405.1	Cth-212	1787	326aa	ENSMUSP00000295768.1	Nonsense mediated decay		-	-
ENSMUST00000561840.1	Cth-217	1766	72aa	ENSMUSP00000340203.1	Nonsense mediated decay		-	-
ENSMUST00000561845.1	Cth-222	1743	203aa	ENSMUSP00000340208.1	Nonsense mediated decay		-	-
ENSMUST00000517403.1	Cth-210	1691	129aa	ENSMUSP00000295766.1	Nonsense mediated decay		-	-
ENSMUST00000577157.1	Cth-227	1675	302aa	ENSMUSP00000355520.1	Nonsense mediated decay		-	-
ENSMUST00000585409.1	Cth-228	1623	69aa	ENSMUSP00000363774.1	Nonsense mediated decay		-	-
ENSMUST00000561848.1	Cth-225	1523	121aa	ENSMUSP00000340211.1	Nonsense mediated decay		-	-
ENSMUST00000561843.1	Cth-220	1337	63aa	ENSMUSP00000340206.1	Nonsense mediated decay		-	-
ENSMUST00000129805.2	Cth-203	675	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000125028.2	Cth-202	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000198009.2	Cth-204	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Gene: Cth ENSMUSG00000028179

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Gene: Cth ENSMUSG00000028179

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