Gene: Polr3a ENSMUSG00000025280

Description

polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836]

Gene Synonyms

9330175N20Rik, RPC1, RPC155

Location

Chromosome 14: 24,498,761-24,537,138 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 19 transcripts (splice variants), 236 orthologues, 2 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000026322.10	Polr3a-201	4707	1390aa	ENSMUSP00000026322.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36828	B2RXC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000513914.1	Polr3a-212	4650	1371aa	ENSMUSP00000292277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513915.1	Polr3a-213	4461	1308aa	ENSMUSP00000292278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513920.1	Polr3a-218	3227	447aa	ENSMUSP00000292283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513919.1	Polr3a-217	1775	406aa	ENSMUSP00000292282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000513912.1	Polr3a-210	4885	1225aa	ENSMUSP00000292275.1	Nonsense mediated decay		-	-
ENSMUST00000223718.2	Polr3a-202	4835	649aa	ENSMUSP00000153243.2	Nonsense mediated decay		Q7TSI4	-
ENSMUST00000513918.1	Polr3a-216	4823	1298aa	ENSMUSP00000292281.1	Nonsense mediated decay		-	-
ENSMUST00000513909.1	Polr3a-207	4705	649aa	ENSMUSP00000292272.1	Nonsense mediated decay		-	-
ENSMUST00000554079.1	Polr3a-219	4687	1041aa	ENSMUSP00000332442.1	Nonsense mediated decay		-	-
ENSMUST00000513916.1	Polr3a-214	4669	691aa	ENSMUSP00000292279.1	Nonsense mediated decay		-	-
ENSMUST00000513917.1	Polr3a-215	4668	894aa	ENSMUSP00000292280.1	Nonsense mediated decay		-	-
ENSMUST00000513911.1	Polr3a-209	4652	1290aa	ENSMUSP00000292274.1	Nonsense mediated decay		-	-
ENSMUST00000513908.1	Polr3a-206	4589	445aa	ENSMUSP00000292271.1	Nonsense mediated decay		-	-
ENSMUST00000513913.1	Polr3a-211	4539	220aa	ENSMUSP00000292276.1	Nonsense mediated decay		-	-
ENSMUST00000513910.1	Polr3a-208	4518	108aa	ENSMUSP00000292273.1	Nonsense mediated decay		-	-
ENSMUST00000225526.2	Polr3a-205	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225014.2	Polr3a-204	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000223848.2	Polr3a-203	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Gene: Polr3a ENSMUSG00000025280

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Gene: Polr3a ENSMUSG00000025280

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