Gene: Ankrd1 ENSMUSG00000024803

Description

ankyrin repeat domain 1 [Source:MGI Symbol;Acc:MGI:1097717]

Gene Synonyms

Alrp, CARP, Crap, MARP1

Location

Chromosome 19: 36,089,361-36,097,499 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 6 transcripts (splice variants), 240 orthologues, 1 paralogue and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000237142.2	Ankrd1-205	2020	319aa	ENSMUSP00000157960.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29771	Q9CR42	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000025718.10	Ankrd1-201	1818	315aa	ENSMUSP00000025718.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A498WFQ0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236579.2	Ankrd1-204	1920	285aa	ENSMUSP00000157975.2	Nonsense mediated decay		A0A494BA80	-
ENSMUST00000237338.2	Ankrd1-206	1843	262aa	ENSMUSP00000158472.2	Nonsense mediated decay		A0A494BBH7	-
ENSMUST00000235941.2	Ankrd1-203	1833	202aa	ENSMUSP00000158281.2	Nonsense mediated decay		A0A494BB19	-
ENSMUST00000235221.2	Ankrd1-202	1740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Ankrd1 ENSMUSG00000024803

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Gene: Ankrd1 ENSMUSG00000024803

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