Gene: Csf1r ENSMUSG00000024621

Description

colony stimulating factor 1 receptor [Source:MGI Symbol;Acc:MGI:1339758]

Gene Synonyms

CD115, CSF-1R, Csfmr, Fim-2, Fim2, Fms, M-CSFR

Location

Chromosome 18: 61,233,670-61,265,221 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 6 transcripts (splice variants), 272 orthologues, 53 paralogues and is associated with 74 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000115268.4	Csf1r-202	4701	977aa	ENSMUSP00000110923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29280	P09581 Q0P635	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000025523.13	Csf1r-201	3870	977aa	ENSMUSP00000025523.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29280	P09581 Q0P635	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235447.2	Csf1r-203	776	139aa	ENSMUSP00000158568.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBK8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237706.2	Csf1r-205	416	103aa	ENSMUSP00000157861.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA23	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237873.2	Csf1r-206	465	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237485.2	Csf1r-204	2035	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Csf1r ENSMUSG00000024621

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Gene: Csf1r ENSMUSG00000024621

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