Gene: Cdx1 ENSMUSG00000024619

Description

caudal type homeobox 1 [Source:MGI Symbol;Acc:MGI:88360]

Gene Synonyms

Cdx, Cdx-1

Location

Chromosome 18: 61,151,934-61,169,314 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 4 transcripts (splice variants), 95 orthologues, 2 paralogues and is associated with 19 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025521.10	Cdx1-201	1771	268aa	ENSMUSP00000025521.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29279	P18111	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000552394.1	Cdx1-203	1766	187aa	ENSMUSP00000330757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000552393.1	Cdx1-202	1896	168aa	ENSMUSP00000330756.1	Nonsense mediated decay		-	-
ENSMUST00000552395.1	Cdx1-204	1854	154aa	ENSMUSP00000330758.1	Nonsense mediated decay		-	-

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Gene: Cdx1 ENSMUSG00000024619

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Gene: Cdx1 ENSMUSG00000024619

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