Gene: Rax ENSMUSG00000024518

Description

retina and anterior neural fold homeobox [Source:MGI Symbol;Acc:MGI:109632]

Gene Synonyms

E130303K03Rik, Rx, ey1

Location

Chromosome 18: 66,061,348-66,072,858 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 7 transcripts (splice variants), 97 orthologues, 47 paralogues and is associated with 24 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025396.5	Rax-201	1672	342aa	ENSMUSP00000025396.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29311	O35602	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238035.2	Rax-207	2323	104aa	ENSMUSP00000158348.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BB35	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000237506.2	Rax-205	909	215aa	ENSMUSP00000157707.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9Q2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235720.2	Rax-202	656	164aa	ENSMUSP00000158513.2	Nonsense mediated decay		A0A494BBH8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000237710.2	Rax-206	2856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236247.2	Rax-203	1871	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236444.2	Rax-204	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Rax ENSMUSG00000024518

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Gene: Rax ENSMUSG00000024518

Summary

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