Gene: Gtf2a1l ENSMUSG00000024154

Description

general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078]

Gene Synonyms

1700011N16Rik, Alf, Gtf2a1lf

Location

Chromosome 17: 88,976,072-89,022,585 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 6 transcripts (splice variants), 160 orthologues, 1 paralogue and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024970.12	Gtf2a1l-201	1637	468aa	ENSMUSP00000024970.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29024	Q8R4I4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000577302.1	Gtf2a1l-206	1376	409aa	ENSMUSP00000355665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000161481.2	Gtf2a1l-202	743	242aa	ENSMUSP00000124286.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E0CYD4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000577301.1	Gtf2a1l-205	1535	164aa	ENSMUSP00000355664.1	Nonsense mediated decay		-	-
ENSMUST00000577300.1	Gtf2a1l-204	900	95aa	ENSMUSP00000355663.1	Nonsense mediated decay		-	-
ENSMUST00000234392.2	Gtf2a1l-203	1252	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

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Gene: Gtf2a1l ENSMUSG00000024154

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Gene: Gtf2a1l ENSMUSG00000024154

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