Gene: Gabrr2 ENSMUSG00000023267

Description

gamma-aminobutyric acid type A receptor subunit rho 2 [Source:MGI Symbol;Acc:MGI:95626]

Location

Chromosome 4: 33,062,937-33,096,126 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 6 transcripts (splice variants), 264 orthologues, 41 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024035.10	Gabrr2-201	1933	490aa	ENSMUSP00000024035.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18020	P56476-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000108162.8	Gabrr2-202	1933	465aa	ENSMUSP00000103797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P56476-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000131920.8	Gabrr2-203	714	203aa	ENSMUSP00000118514.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3KG54	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000147889.2	Gabrr2-204	700	221aa	ENSMUSP00000114337.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6YZH6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000440778.1	Gabrr2-205	2251	325aa	ENSMUSP00000219141.1	Nonsense mediated decay		-	-
ENSMUST00000440779.1	Gabrr2-206	2113	390aa	ENSMUSP00000219142.1	Nonsense mediated decay		-	-

Upcoming Ensembl Platform Transition

Gene: Gabrr2 ENSMUSG00000023267

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Gabrr2 ENSMUSG00000023267

Summary

About Us

Get help

Our sister sites

Follow us