Gene: Sod1 ENSMUSG00000022982

Description

superoxide dismutase 1, soluble [Source:MGI Symbol;Acc:MGI:98351]

Gene Synonyms

B430204E11Rik, Cu(2+)-Zn2+ superoxide dismutase, Cu/Zn-SOD, CuZnSOD, Ipo-1, Ipo1, SODC, Sod-1

Location

Chromosome 16: 90,017,408-90,027,657 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 9 transcripts (splice variants), 227 orthologues, 2 paralogues and is associated with 91 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023707.12	Sod1-201	5315	154aa	ENSMUSP00000023707.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37395	P08228	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000423381.1	Sod1-203	5312	153aa	ENSMUSP00000201744.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000423383.1	Sod1-205	5094	135aa	ENSMUSP00000201746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000567975.1	Sod1-207	874	123aa	ENSMUSP00000346338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000423382.1	Sod1-204	1860	59aa	ENSMUSP00000201745.1	Nonsense mediated decay		-	-
ENSMUST00000573615.1	Sod1-209	637	84aa	ENSMUSP00000351978.1	Nonsense mediated decay		-	-
ENSMUST00000567976.1	Sod1-208	575	64aa	ENSMUSP00000346339.1	Nonsense mediated decay		-	-
ENSMUST00000423384.1	Sod1-206	516	44aa	ENSMUSP00000201747.1	Nonsense mediated decay		-	-
ENSMUST00000232505.2	Sod1-202	3970	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Upcoming Ensembl Platform Transition

Gene: Sod1 ENSMUSG00000022982

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Sod1 ENSMUSG00000022982

Summary

About Us

Get help

Our sister sites

Follow us