Gene: Tmem41a ENSMUSG00000022856

Description

transmembrane protein 41a [Source:MGI Symbol;Acc:MGI:1913914]

Gene Synonyms

2900010K02Rik, 5730578N08Rik

Location

Chromosome 16: 21,753,076-21,766,307 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 6 transcripts (splice variants), 123 orthologues, 2 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023562.9	Tmem41a-201	1360	264aa	ENSMUSP00000023562.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28064	Q9D8U2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000549280.1	Tmem41a-206	1313	226aa	ENSMUSP00000327643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000436327.1	Tmem41a-204	1677	200aa	ENSMUSP00000214690.1	Nonsense mediated decay		-	-
ENSMUST00000436326.1	Tmem41a-203	1498	107aa	ENSMUSP00000214689.1	Nonsense mediated decay		-	-
ENSMUST00000436328.1	Tmem41a-205	1335	166aa	ENSMUSP00000214691.1	Nonsense mediated decay		-	-
ENSMUST00000232635.2	Tmem41a-202	1184	59aa	ENSMUSP00000156055.2	Nonsense mediated decay		A0A338P6N6	-

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Gene: Tmem41a ENSMUSG00000022856

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Gene: Tmem41a ENSMUSG00000022856

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