Gene: Rrn3 ENSMUSG00000022682

Description

RRN3 RNA polymerase I transcription factor homolog (yeast) [Source:MGI Symbol;Acc:MGI:1925255]

Gene Synonyms

E130302O19Rik, TIF-1A

Location

Chromosome 16: 13,598,376-13,635,974 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 27 transcripts (splice variants), 206 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023363.9	Rrn3-201	3605	656aa	ENSMUSP00000023363.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27968	B2RS91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000395098.1	Rrn3-211	3603	655aa	ENSMUSP00000173461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395095.1	Rrn3-208	3586	650aa	ENSMUSP00000173458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395104.1	Rrn3-217	3576	587aa	ENSMUSP00000173467.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395106.1	Rrn3-219	3552	637aa	ENSMUSP00000173469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395108.1	Rrn3-221	3546	636aa	ENSMUSP00000173471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395094.1	Rrn3-207	3518	568aa	ENSMUSP00000173457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395093.1	Rrn3-206	3509	623aa	ENSMUSP00000173456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395114.1	Rrn3-227	3497	561aa	ENSMUSP00000173477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395109.1	Rrn3-222	3474	554aa	ENSMUSP00000173472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395090.1	Rrn3-203	2240	621aa	ENSMUSP00000173453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000395111.1	Rrn3-224	4904	384aa	ENSMUSP00000173474.1	Nonsense mediated decay		-	-
ENSMUST00000395102.1	Rrn3-215	4334	133aa	ENSMUSP00000173465.1	Nonsense mediated decay		-	-
ENSMUST00000395101.1	Rrn3-214	4200	604aa	ENSMUSP00000173464.1	Nonsense mediated decay		-	-
ENSMUST00000395107.1	Rrn3-220	3993	604aa	ENSMUSP00000173470.1	Nonsense mediated decay		-	-
ENSMUST00000395091.1	Rrn3-204	3869	602aa	ENSMUSP00000173454.1	Nonsense mediated decay		-	-
ENSMUST00000395096.1	Rrn3-209	3791	41aa	ENSMUSP00000173459.1	Nonsense mediated decay		-	-
ENSMUST00000395092.1	Rrn3-205	3779	122aa	ENSMUSP00000173455.1	Nonsense mediated decay		-	-
ENSMUST00000395100.1	Rrn3-213	3675	91aa	ENSMUSP00000173463.1	Nonsense mediated decay		-	-
ENSMUST00000395099.1	Rrn3-212	3592	117aa	ENSMUSP00000173462.1	Nonsense mediated decay		-	-
ENSMUST00000395110.1	Rrn3-223	3560	486aa	ENSMUSP00000173473.1	Nonsense mediated decay		-	-
ENSMUST00000395113.1	Rrn3-226	3491	452aa	ENSMUSP00000173476.1	Nonsense mediated decay		-	-
ENSMUST00000395112.1	Rrn3-225	3489	180aa	ENSMUSP00000173475.1	Nonsense mediated decay		-	-
ENSMUST00000395097.1	Rrn3-210	3465	384aa	ENSMUSP00000173460.1	Nonsense mediated decay		-	-
ENSMUST00000395105.1	Rrn3-218	3303	96aa	ENSMUSP00000173468.1	Nonsense mediated decay		-	-
ENSMUST00000395103.1	Rrn3-216	3209	96aa	ENSMUSP00000173466.1	Nonsense mediated decay		-	-
ENSMUST00000230102.2	Rrn3-202	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Gene: Rrn3 ENSMUSG00000022682

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Gene: Rrn3 ENSMUSG00000022682

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