Gene: Lrp12 ENSMUSG00000022305

Description

low density lipoprotein-related protein 12 [Source:MGI Symbol;Acc:MGI:2443132]

Gene Synonyms

C820005L12Rik

Location

Chromosome 15: 39,733,983-39,807,415 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 7 transcripts (splice variants), 203 orthologues, 15 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022916.14	Lrp12-201	4315	858aa	ENSMUSP00000022916.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27446	Q8BUJ9-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000110305.4	Lrp12-202	4258	839aa	ENSMUSP00000105934.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS84168	Q8BUJ9-2	GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000477092.1	Lrp12-206	4559	62aa	ENSMUSP00000255455.1	Nonsense mediated decay		-	-
ENSMUST00000477093.1	Lrp12-207	4312	61aa	ENSMUSP00000255456.1	Nonsense mediated decay		-	-
ENSMUST00000477091.1	Lrp12-205	4206	62aa	ENSMUSP00000255454.1	Nonsense mediated decay		-	-
ENSMUST00000228575.2	Lrp12-204	806	43aa	ENSMUSP00000154273.2	Nonsense mediated decay		A0A2I3BQR2	-
ENSMUST00000146714.2	Lrp12-203	433	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Gene: Lrp12 ENSMUSG00000022305

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Gene: Lrp12 ENSMUSG00000022305

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