Gene: Cln5 ENSMUSG00000022125

Description

ceroid-lipofuscinosis, neuronal 5 [Source:MGI Symbol;Acc:MGI:2442253]

Gene Synonyms

A730075N08Rik

Location

Chromosome 14: 103,307,652-103,318,635 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 13 transcripts (splice variants), 196 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022721.8	Cln5-201	2445	341aa	ENSMUSP00000022721.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27314	B2RUP8 Q3UMW8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000398943.1	Cln5-211	2433	187aa	ENSMUSP00000177306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000398938.1	Cln5-206	2364	314aa	ENSMUSP00000177301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000398945.1	Cln5-213	2219	106aa	ENSMUSP00000177308.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000398936.1	Cln5-204	5147	120aa	ENSMUSP00000177299.1	Nonsense mediated decay		-	-
ENSMUST00000398942.1	Cln5-210	2889	101aa	ENSMUSP00000177305.1	Nonsense mediated decay		-	-
ENSMUST00000398944.1	Cln5-212	2723	111aa	ENSMUSP00000177307.1	Nonsense mediated decay		-	-
ENSMUST00000398940.1	Cln5-208	2473	113aa	ENSMUSP00000177303.1	Nonsense mediated decay		-	-
ENSMUST00000398941.1	Cln5-209	2384	118aa	ENSMUSP00000177304.1	Nonsense mediated decay		-	-
ENSMUST00000398937.1	Cln5-205	2362	61aa	ENSMUSP00000177300.1	Nonsense mediated decay		-	-
ENSMUST00000398939.1	Cln5-207	2338	46aa	ENSMUSP00000177302.1	Nonsense mediated decay		-	-
ENSMUST00000398935.1	Cln5-203	2037	341aa	ENSMUSP00000177298.1	Nonsense mediated decay	CCDS27314	B2RUP8	-
ENSMUST00000227117.2	Cln5-202	298	37aa	ENSMUSP00000154528.2	Nonsense mediated decay		A0A2I3BRB6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Gene: Cln5 ENSMUSG00000022125

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Gene: Cln5 ENSMUSG00000022125

Summary

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