Gene: Cab39l ENSMUSG00000021981

Description

calcium binding protein 39-like [Source:MGI Symbol;Acc:MGI:1914081]

Gene Synonyms

1500031K13Rik, 2810425O13Rik, 4930520C08Rik, MO2L

Location

Chromosome 14: 59,678,421-59,823,213 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 6 transcripts (splice variants), 209 orthologues, 1 paralogue and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022553.6	Cab39l-201	3037	337aa	ENSMUSP00000022553.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27171	Q9DB16-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225595.2	Cab39l-206	1380	296aa	ENSMUSP00000153643.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9DB16-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000223678.2	Cab39l-202	623	79aa	ENSMUSP00000153281.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YD53	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224893.2	Cab39l-204	496	32aa	ENSMUSP00000153449.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YE11	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000225149.2	Cab39l-205	372	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000224281.2	Cab39l-203	3546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Cab39l ENSMUSG00000021981

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Gene: Cab39l ENSMUSG00000021981

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