Gene: Pspc1 ENSMUSG00000021938

Description

paraspeckle protein 1 [Source:MGI Symbol;Acc:MGI:1913895]

Gene Synonyms

5730470C09Rik, PSP1

Location

Chromosome 14: 56,958,166-57,015,804 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 9 transcripts (splice variants), 206 orthologues, 7 paralogues and is associated with 15 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022507.14	Pspc1-201	4115	523aa	ENSMUSP00000022507.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27151	Q8R326-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000163924.2	Pspc1-202	2863	466aa	ENSMUSP00000133038.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8R326-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000563099.1	Pspc1-209	2498	374aa	ENSMUSP00000341462.1	Nonsense mediated decay		-	-
ENSMUST00000515648.1	Pspc1-205	2388	393aa	ENSMUSP00000294011.1	Nonsense mediated decay		-	-
ENSMUST00000515649.1	Pspc1-206	2317	401aa	ENSMUSP00000294012.1	Nonsense mediated decay		-	-
ENSMUST00000515651.1	Pspc1-208	2024	356aa	ENSMUSP00000294014.1	Nonsense mediated decay		-	-
ENSMUST00000515650.1	Pspc1-207	1834	292aa	ENSMUSP00000294013.1	Nonsense mediated decay		-	-
ENSMUST00000168575.2	Pspc1-204	601	59aa	ENSMUSP00000125780.2	Nonsense mediated decay		F7D909	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000168524.8	Pspc1-203	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Gene: Pspc1 ENSMUSG00000021938

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Gene: Pspc1 ENSMUSG00000021938

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