Gene: Spata9 ENSMUSG00000021590

Description

spermatogenesis associated 9 [Source:MGI Symbol;Acc:MGI:1922821]

Gene Synonyms

1700030K01Rik, 4930599C08Rik, A930023H06Rik

Location

Chromosome 13: 76,115,269-76,147,091 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 4 transcripts (splice variants), 99 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022081.3	Spata9-201	1057	252aa	ENSMUSP00000022081.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26653	Q9D9R3-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000225553.2	Spata9-203	581	103aa	ENSMUSP00000153343.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDA1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000581204.1	Spata9-204	1054	64aa	ENSMUSP00000359567.1	Nonsense mediated decay		-	-
ENSMUST00000223744.2	Spata9-202	908	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Upcoming Ensembl Platform Transition

Gene: Spata9 ENSMUSG00000021590

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Spata9 ENSMUSG00000021590

Summary

About Us

Get help

Our sister sites

Follow us