Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Hs1bp3 ENSMUSG00000020605

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Description

HCLS1 binding protein 3 [Source:MGI Symbol;Acc:MGI:1913224]

Location

Chromosome 12: 8,363,392-8,393,824 forward strand.

GRCm39:CM001005.3

About this gene

This gene has 8 transcripts (splice variants), 144 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000020927.10	Hs1bp3-201	2959	395aa	ENSMUSP00000020927.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49024	Q3TC93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000561289.1	Hs1bp3-208	2957	311aa	ENSMUSP00000339652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000220300.2	Hs1bp3-203	583	157aa	ENSMUSP00000151390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P6R8	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000220199.2	Hs1bp3-202	361	109aa	ENSMUSP00000151262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P6H5	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000532491.1	Hs1bp3-205	3162	53aa	ENSMUSP00000310854.1	Nonsense mediated decay		-	-
ENSMUST00000532490.1	Hs1bp3-204	3043	71aa	ENSMUSP00000310853.1	Nonsense mediated decay		-	-
ENSMUST00000532493.1	Hs1bp3-207	2788	71aa	ENSMUSP00000310856.1	Nonsense mediated decay		-	-
ENSMUST00000532492.1	Hs1bp3-206	2519	89aa	ENSMUSP00000310855.1	Nonsense mediated decay		-	-

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Summary

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