Gene: Supt4a ENSMUSG00000020485

Description

SPT4A, DSIF elongation factor subunit [Source:MGI Symbol;Acc:MGI:107416]

Gene Synonyms

Supt4h, Supt4h1

Location

Chromosome 11: 87,628,378-87,634,449 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 3 transcripts (splice variants), 221 orthologues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000093955.12	Supt4a-201	706	117aa	ENSMUSP00000091487.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36270	P63271	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000152700.8	Supt4a-203	854	104aa	ENSMUSP00000118619.2	Nonsense mediated decay		D6RHM5	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000141169.2	Supt4a-202	799	87aa	ENSMUSP00000117762.2	Nonsense mediated decay		G3UVU8	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Supt4a ENSMUSG00000020485

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Gene: Supt4a ENSMUSG00000020485

Summary

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