Gene: Ltv1 ENSMUSG00000019814

Description

LTV1 ribosome biogenesis factor [Source:MGI Symbol;Acc:MGI:2447810]

Gene Synonyms

2610020N02Rik

Location

Chromosome 10: 13,053,880-13,068,939 reverse strand.

GRCm39:CM001003.3

About this gene

This gene has 8 transcripts (splice variants), 208 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000019950.7	Ltv1-201	2304	470aa	ENSMUSP00000019950.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35845	Q6NSQ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000566444.1	Ltv1-208	2328	478aa	ENSMUSP00000344807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420177.1	Ltv1-206	2292	466aa	ENSMUSP00000198540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000420174.1	Ltv1-203	2275	357aa	ENSMUSP00000198537.1	Nonsense mediated decay		-	-
ENSMUST00000420175.1	Ltv1-204	2271	105aa	ENSMUSP00000198538.1	Nonsense mediated decay		-	-
ENSMUST00000420176.1	Ltv1-205	2267	219aa	ENSMUSP00000198539.1	Nonsense mediated decay		-	-
ENSMUST00000420178.1	Ltv1-207	1973	62aa	ENSMUSP00000198541.1	Nonsense mediated decay		-	-
ENSMUST00000219824.2	Ltv1-202	664	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Upcoming Ensembl Platform Transition

Gene: Ltv1 ENSMUSG00000019814

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Ltv1 ENSMUSG00000019814

Summary

About Us

Get help

Our sister sites

Follow us