Gene: Cabs1 ENSMUSG00000007907

Description

calcium binding protein, spermatid specific 1 [Source:MGI Symbol;Acc:MGI:1918227]

Gene Synonyms

4931407G18Rik

Location

Chromosome 5: 88,127,255-88,129,405 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 3 transcripts (splice variants), 58 orthologues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000008051.5	Cabs1-201	1505	391aa	ENSMUSP00000008051.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS39136	Q8C633	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000585959.1	Cabs1-203	1152	316aa	ENSMUSP00000364324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000585958.1	Cabs1-202	1554	391aa	ENSMUSP00000364323.1	Nonsense mediated decay	CCDS39136	-	-

Upcoming Ensembl Platform Transition

Gene: Cabs1 ENSMUSG00000007907

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Gene: Cabs1 ENSMUSG00000007907

Summary

About Us

Get help

Our sister sites

Follow us