Gene: Hif3a ENSMUSG00000004328

Description

hypoxia inducible factor 3, alpha subunit [Source:MGI Symbol;Acc:MGI:1859778]

Gene Synonyms

MOP7, Nepas, bHLHe17

Location

Chromosome 7: 16,765,432-16,796,352 reverse strand.

GRCm39:CM001000.3

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues, 7 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108492.9	Hif3a-202	6402	664aa	ENSMUSP00000104132.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS52045	Q0VBL6-3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000037762.11	Hif3a-201	2206	662aa	ENSMUSP00000048248.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20860	Q0VBL6-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000153833.2	Hif3a-204	461	152aa	ENSMUSP00000117728.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z377	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000139224.3	Hif3a-203	371	76aa	ENSMUSP00000146258.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RQ59	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Gene: Hif3a ENSMUSG00000004328

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Gene: Hif3a ENSMUSG00000004328

Summary

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