Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VSX1 ENSGGOG00000001283

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Description

visual system homeobox 1 [Source:UniProtKB Gene Name;Acc:A0A2I2ZXX9]

Location

Chromosome 20: 25,397,818-25,409,321 reverse strand.

gorGor4:FR853091.2

About this gene

This gene has 3 transcripts (splice variants) and 174 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGGOT00000001291.3	VSX1-203	2193	365aa	ENSGGOP00000001266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3QG17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSGGOT00000066710.1	VSX1-201	2222	301aa	ENSGGOP00000052072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I2ZXX9	-
ENSGGOT00000059709.1	VSX1-202	2041	236aa	ENSGGOP00000048593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I2ZMR4	-

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Summary

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