Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN7 ENSGALG00010025801

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Description

protein tyrosine phosphatase non-receptor type 7 [Source:UniProtKB Gene Name;Acc:A0A8V1A976]

Location

Primary_assembly 26: 404,065-410,771 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028507.1

About this gene

This gene has 5 transcripts (splice variants), 130 orthologues and 34 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010062924.1	PTPN7-202	2102	363aa	ENSGALP00010038861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PFJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010062942.1	PTPN7-203	1910	362aa	ENSGALP00010038876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A6N4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010062919.1	PTPN7-204	1827	339aa	ENSGALP00010038858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1ABN2	-
ENSGALT00010062934.1	PTPN7-201	1721	326aa	ENSGALP00010038870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A996	-
ENSGALT00010062911.1	PTPN7-205	946	147aa	ENSGALP00010038855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A976	-

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Summary

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