Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCN3A ENSGALG00010025628

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Description

sodium voltage-gated channel alpha subunit 3 [Source:UniProtKB Gene Name;Acc:A0A8V1AB75]

Location

Primary_assembly 7: 19,534,351-19,592,045 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028488.1

About this gene

This gene has 3 transcripts (splice variants), 130 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010062552.1	SCN3A-201	8111	2013aa	ENSGALP00010038676.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1AB75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010062558.1	SCN3A-202	8111	2013aa	ENSGALP00010038678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A8P6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010062546.1	SCN3A-203	7935	1888aa	ENSGALP00010038673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A8P0	-

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Summary

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