Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PPFIA1 ENSGALG00010024757

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Description

PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]

Location

Primary_assembly 5: 17,393,213-17,441,298 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028486.1

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSGALT00010060433.1	PPFIA1-201	4491	1266aa	ENSGALP00010037192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSGALT00010060443.1	PPFIA1-203	4637	1211aa	ENSGALP00010037202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010060446.1	PPFIA1-204	4574	1190aa	ENSGALP00010037205.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSGALT00010060437.1	PPFIA1-202	4323	1210aa	ENSGALP00010037196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

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Summary

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