Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HNF4A ENSGALG00010024342

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Description

hepatocyte nuclear factor 4 alpha [Source:NCBI gene (formerly Entrezgene);Acc:419198]

Gene Synonyms

HNF4alpha

Location

Primary_assembly 20: 5,759,574-5,789,267 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028501.1

About this gene

This gene has 3 transcripts (splice variants), 235 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010059366.1	HNF4A-203	3457	466aa	ENSGALP00010036240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1NZ15	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010059368.1	HNF4A-202	3432	443aa	ENSGALP00010036242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A4M5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010059362.1	HNF4A-201	3292	425aa	ENSGALP00010036236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZRY5	-

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Summary

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