Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HMG20A ENSGALG00010020843

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Description

high mobility group 20A [Source:NCBI gene (formerly Entrezgene);Acc:415346]

Location

Primary_assembly 10: 2,986,316-3,023,838 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028491.1

About this gene

This gene has 7 transcripts (splice variants), 204 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010050407.1	HMG20A-207	1133	374aa	ENSGALP00010029758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZG52	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSGALT00010050419.1	HMG20A-202	4303	355aa	ENSGALP00010029766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZM74	-
ENSGALT00010050413.1	HMG20A-203	4061	351aa	ENSGALP00010029764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZG06	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010050410.1	HMG20A-201	3915	344aa	ENSGALP00010029762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZET2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010050408.1	HMG20A-204	1235	316aa	ENSGALP00010029760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0Z906	-
ENSGALT00010050398.1	HMG20A-205	1156	370aa	ENSGALP00010029756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZM65	-
ENSGALT00010050403.1	HMG20A-206	1058	330aa	ENSGALP00010029757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0ZES7	-

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Summary

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