integrin subunit beta 5 [Source:NCBI gene (formerly Entrezgene);Acc:395142]
Primary_assembly 7: 27,489,948-27,531,783 reverse strand.
bGalGal1.mat.broiler.GRCg7b:CM028488.1
This gene has 6 transcripts (splice variants), 209 orthologues and 8 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | Flags |
|---|---|---|---|---|---|---|
| ENSGALT00010048297.1 | ITGB5-204 | 3190 | 826aa | ENSGALP00010028477.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSGALT00010048305.1 | ITGB5-206 | 3177 | 811aa | ENSGALP00010028482.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSGALT00010048282.1 | ITGB5-201 | 3051 | 763aa | ENSGALP00010028468.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| ENSGALT00010048292.1 | ITGB5-203 | 3049 | 779aa | ENSGALP00010028474.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSGALT00010048303.1 | ITGB5-205 | 3027 | 812aa | ENSGALP00010028481.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| ENSGALT00010048285.1 | ITGB5-202 | 2970 | 819aa | ENSGALP00010028470.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
