Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LIMS1 ENSGALG00010015374

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Description

LIM zinc finger domain containing 1 [Source:NCBI gene (formerly Entrezgene);Acc:414880]

Gene Synonyms

PINCH1

Location

Primary_assembly 1: 136,330,096-136,422,398 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028482.1

About this gene

This gene has 10 transcripts (splice variants), 229 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010036936.1	LIMS1-207	4697	398aa	ENSGALP00010021497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSGALT00010036930.1	LIMS1-206	3763	387aa	ENSGALP00010021495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036946.1	LIMS1-204	3329	362aa	ENSGALP00010021502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5P599	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSGALT00010036942.1	LIMS1-205	3033	354aa	ENSGALP00010021499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036981.1	LIMS1-208	3015	350aa	ENSGALP00010021520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036987.1	LIMS1-201	2980	336aa	ENSGALP00010021521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036958.1	LIMS1-210	2450	311aa	ENSGALP00010021512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036993.1	LIMS1-202	2411	338aa	ENSGALP00010021523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036973.1	LIMS1-209	2323	335aa	ENSGALP00010021518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010036954.1	LIMS1-203	1524	306aa	ENSGALP00010021508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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