Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: AFF4 ENSGALG00010013737

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Description

ALF transcription elongation factor 4 [Source:UniProtKB Gene Name;Acc:A0A8V0YLL1]

Location

Primary_assembly 13: 16,688,518-16,732,631 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028494.1

About this gene

This gene has 2 transcripts (splice variants), 214 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010032963.1	AFF4-201	4299	1167aa	ENSGALP00010019493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YL30	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010032971.1	AFF4-202	4155	1166aa	ENSGALP00010019496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YLL1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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