Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: AFF2 ENSGALG00010013206

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Description

ALF transcription elongation factor 2 [Source:UniProtKB Gene Name;Acc:A0A8V0YL00]

Location

Primary_assembly 4: 18,141,997-18,441,354 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028485.1

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010031718.1	AFF2-205	4704	1291aa	ENSGALP00010018566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YCN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010031702.1	AFF2-201	4607	1281aa	ENSGALP00010018550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YI77	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSGALT00010031706.1	AFF2-202	4586	1274aa	ENSGALP00010018554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YL00	-
ENSGALT00010031709.1	AFF2-203	4520	1252aa	ENSGALP00010018557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YQW5	-
ENSGALT00010031714.1	AFF2-204	4472	1236aa	ENSGALP00010018562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YQX0	-

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Summary

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