Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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ID History
- Gene history

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Gene: HBP1 ENSGALG00010009081

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Description

HMG-box transcription factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:417705]

Location

Primary_assembly 1: 14,741,149-14,756,465 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028482.1

About this gene

This gene has 2 transcripts (splice variants) and 266 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010021641.1	HBP1-202	2629	530aa	ENSGALP00010012338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0Y8L1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010021654.1	HBP1-201	2697	525aa	ENSGALP00010012348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0Y8M1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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