Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HTR1E ENSGALG00010003918

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Description

5-hydroxytryptamine receptor 1E [Source:UniProtKB Gene Name;Acc:A0A8V0XI02]

Location

Primary_assembly 3: 76,321,857-76,352,426 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028484.1

About this gene

This gene has 5 transcripts (splice variants), 156 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010009068.1	HTR1E-205	1422	388aa	ENSGALP00010005365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XI02	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSGALT00010009072.1	HTR1E-204	7248	371aa	ENSGALP00010005369.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BS44	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010009070.1	HTR1E-201	6820	371aa	ENSGALP00010005367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BS44	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010009069.1	HTR1E-202	6406	371aa	ENSGALP00010005366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BS44	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010009071.1	HTR1E-203	5423	371aa	ENSGALP00010005368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BS44	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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