Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LCAL1 ENSG00000286042

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Description

lung cancer associated lncRNA 1 [Source:HGNC Symbol;Acc:HGNC:25837]

Gene Synonyms

ONCO-LNCRNA-27

Location

Chromosome 6: 79,269,761-79,313,395 reverse strand.

GRCh38:CM000668.2

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000759886.1	LCAL1-204	552	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000651663.1	LCAL1-202	3885	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759893.1	LCAL1-209	1313	No protein	-	lncRNA		-	-
ENST00000759894.1	LCAL1-210	1176	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759890.1	LCAL1-206	1161	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759889.1	LCAL1-205	1133	No protein	-	lncRNA		-	-
ENST00000759892.1	LCAL1-208	1078	No protein	-	lncRNA		-	-
ENST00000759895.1	LCAL1-211	1003	No protein	-	lncRNA		-	-
ENST00000759891.1	LCAL1-207	974	No protein	-	lncRNA		-	-
ENST00000651762.1	LCAL1-203	830	No protein	-	lncRNA		-	-
ENST00000651107.1	LCAL1-201	547	No protein	-	lncRNA		-	-

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Summary

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