Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01338 ENSG00000281327

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Description

long intergenic non-protein coding RNA 1338 [Source:HGNC Symbol;Acc:HGNC:50547]

Location

Chromosome 5: 82,807,475-82,860,008 reverse strand.

GRCh38:CM000667.2

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000689277.2	LINC01338-204	1666	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000654717.3	LINC01338-202	3247	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000627179.4	LINC01338-201	2620	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000687140.2	LINC01338-203	1395	No protein	-	lncRNA		-	-
ENST00000745103.1	LINC01338-207	1067	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000745104.1	LINC01338-208	1036	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000745105.1	LINC01338-209	965	No protein	-	lncRNA		-	-
ENST00000693444.2	LINC01338-205	809	No protein	-	lncRNA		-	-
ENST00000745107.1	LINC01338-211	598	No protein	-	lncRNA		-	-
ENST00000701729.1	LINC01338-206	558	No protein	-	lncRNA		-	-
ENST00000745112.1	LINC01338-216	516	No protein	-	lncRNA		-	-
ENST00000745110.1	LINC01338-214	494	No protein	-	lncRNA		-	-
ENST00000745108.1	LINC01338-212	484	No protein	-	lncRNA		-	-
ENST00000745109.1	LINC01338-213	452	No protein	-	lncRNA		-	-
ENST00000745106.1	LINC01338-210	436	No protein	-	lncRNA		-	-
ENST00000745111.1	LINC01338-215	429	No protein	-	lncRNA		-	-

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Summary

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