Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC02227 ENSG00000276778

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Description

long intergenic non-protein coding RNA 2227 [Source:HGNC Symbol;Acc:HGNC:53096]

Location

Chromosome 5: 158,320,683-158,515,176 reverse strand.

GRCh38:CM000667.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000809484.1	LINC02227-202	852	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000619068.1	LINC02227-201	3748	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000809486.1	LINC02227-204	1693	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809491.1	LINC02227-209	950	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809485.1	LINC02227-203	781	No protein	-	lncRNA		-	-
ENST00000809489.1	LINC02227-207	763	No protein	-	lncRNA		-	-
ENST00000809492.1	LINC02227-210	757	No protein	-	lncRNA		-	-
ENST00000809490.1	LINC02227-208	668	No protein	-	lncRNA		-	-
ENST00000809494.1	LINC02227-212	639	No protein	-	lncRNA		-	-
ENST00000809488.1	LINC02227-206	614	No protein	-	lncRNA		-	-
ENST00000809493.1	LINC02227-211	594	No protein	-	lncRNA		-	-
ENST00000809496.1	LINC02227-214	592	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000809495.1	LINC02227-213	524	No protein	-	lncRNA		-	-
ENST00000809497.1	LINC02227-215	496	No protein	-	lncRNA		-	-
ENST00000809487.1	LINC02227-205	376	No protein	-	lncRNA		-	-
ENST00000809499.1	LINC02227-217	376	No protein	-	lncRNA		-	-
ENST00000809498.1	LINC02227-216	363	No protein	-	lncRNA		-	-

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Summary

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