Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PAXIP1-DT ENSG00000273344

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Description

PAXIP1 divergent transcript [Source:HGNC Symbol;Acc:HGNC:27328]

Gene Synonyms

PAXIP1-AS1

Location

Chromosome 7: 155,002,548-155,011,785 forward strand.

GRCh38:CM000669.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000756086.1	PAXIP1-DT-202	640	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000608317.3	PAXIP1-DT-201	2285	No protein	-	lncRNA		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000756087.1	PAXIP1-DT-203	2051	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000756088.1	PAXIP1-DT-204	2038	No protein	-	lncRNA		-	-
ENST00000756089.1	PAXIP1-DT-205	1808	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000756097.1	PAXIP1-DT-213	1337	No protein	-	lncRNA		-	-
ENST00000756091.1	PAXIP1-DT-207	1261	No protein	-	lncRNA		-	-
ENST00000756095.1	PAXIP1-DT-211	1203	No protein	-	lncRNA		-	-
ENST00000756096.1	PAXIP1-DT-212	1194	No protein	-	lncRNA		-	-
ENST00000756093.1	PAXIP1-DT-209	1162	No protein	-	lncRNA		-	-
ENST00000756100.1	PAXIP1-DT-216	1080	No protein	-	lncRNA		-	-
ENST00000756094.1	PAXIP1-DT-210	995	No protein	-	lncRNA		-	-
ENST00000756092.1	PAXIP1-DT-208	984	No protein	-	lncRNA		-	-
ENST00000756099.1	PAXIP1-DT-215	952	No protein	-	lncRNA		-	-
ENST00000756101.1	PAXIP1-DT-217	945	No protein	-	lncRNA		-	-
ENST00000756098.1	PAXIP1-DT-214	862	No protein	-	lncRNA		-	-
ENST00000756090.1	PAXIP1-DT-206	407	No protein	-	lncRNA		-	-

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Summary

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