Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
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Gene: SAP30-DT ENSG00000272870

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Description

SAP30 divergent transcript [Source:HGNC Symbol;Acc:HGNC:54424]

Gene Synonyms

ENST00000608794, MIRE

Location

Chromosome 4: 173,349,543-173,371,866 reverse strand.

GRCh38:CM000666.2

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000651702.2	SAP30-DT-205	1489	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658397.1	SAP30-DT-206	5679	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000609900.1	SAP30-DT-204	1921	No protein	-	lncRNA		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000608892.2	SAP30-DT-202	1047	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000609153.3	SAP30-DT-203	1031	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000666010.4	SAP30-DT-207	840	No protein	-	lncRNA		-	-
ENST00000725023.1	SAP30-DT-208	735	No protein	-	lncRNA		-	-
ENST00000725028.1	SAP30-DT-213	643	No protein	-	lncRNA		-	-
ENST00000725025.1	SAP30-DT-210	633	No protein	-	lncRNA		-	-
ENST00000725026.1	SAP30-DT-211	622	No protein	-	lncRNA		-	-
ENST00000725027.1	SAP30-DT-212	622	No protein	-	lncRNA		-	-
ENST00000608794.1	SAP30-DT-201	587	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000725029.1	SAP30-DT-214	580	No protein	-	lncRNA		-	-
ENST00000725024.1	SAP30-DT-209	561	No protein	-	lncRNA		-	-

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Summary

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