Gene: SLC38A4-AS1 ENSG00000257261

Description

SLC38A4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:56178]

Location

Chromosome 12: 46,383,041-46,876,804 forward strand.

GRCh38:CM000674.2

About this gene

This gene has 58 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000667191.1	SLC38A4-AS1-210	2256	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663959.1	SLC38A4-AS1-207	2298	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666025.1	SLC38A4-AS1-208	2156	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000611243.2	SLC38A4-AS1-204	1828	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000821138.1	SLC38A4-AS1-258	1453	No protein	-	lncRNA	-	-
ENST00000653856.2	SLC38A4-AS1-205	1319	No protein	-	lncRNA	-	-
ENST00000734207.1	SLC38A4-AS1-245	1251	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734190.1	SLC38A4-AS1-228	1149	No protein	-	lncRNA	-	-
ENST00000734206.1	SLC38A4-AS1-244	1111	No protein	-	lncRNA	-	-
ENST00000734204.1	SLC38A4-AS1-242	996	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734205.1	SLC38A4-AS1-243	878	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000551503.5	SLC38A4-AS1-202	829	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000657145.1	SLC38A4-AS1-206	820	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734203.1	SLC38A4-AS1-241	812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687751.2	SLC38A4-AS1-211	793	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717842.1	SLC38A4-AS1-212	736	No protein	-	lncRNA	-	-
ENST00000734193.1	SLC38A4-AS1-231	730	No protein	-	lncRNA	-	-
ENST00000734192.1	SLC38A4-AS1-230	723	No protein	-	lncRNA	-	-
ENST00000666942.1	SLC38A4-AS1-209	718	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734202.1	SLC38A4-AS1-240	706	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734182.1	SLC38A4-AS1-220	697	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734189.1	SLC38A4-AS1-227	697	No protein	-	lncRNA	-	-
ENST00000734184.1	SLC38A4-AS1-222	695	No protein	-	lncRNA	-	-
ENST00000551021.6	SLC38A4-AS1-201	692	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000734183.1	SLC38A4-AS1-221	679	No protein	-	lncRNA	-	-
ENST00000734191.1	SLC38A4-AS1-229	675	No protein	-	lncRNA	-	-
ENST00000821137.1	SLC38A4-AS1-257	647	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734188.1	SLC38A4-AS1-226	634	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734187.1	SLC38A4-AS1-225	625	No protein	-	lncRNA	-	-
ENST00000734180.1	SLC38A4-AS1-218	618	No protein	-	lncRNA	-	-
ENST00000734194.1	SLC38A4-AS1-232	618	No protein	-	lncRNA	-	-
ENST00000734176.1	SLC38A4-AS1-214	615	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734178.1	SLC38A4-AS1-216	609	No protein	-	lncRNA	-	-
ENST00000734185.1	SLC38A4-AS1-223	605	No protein	-	lncRNA	-	-
ENST00000734175.1	SLC38A4-AS1-213	592	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734186.1	SLC38A4-AS1-224	582	No protein	-	lncRNA	-	-
ENST00000821136.1	SLC38A4-AS1-256	582	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821132.1	SLC38A4-AS1-252	581	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734179.1	SLC38A4-AS1-217	580	No protein	-	lncRNA	-	-
ENST00000734181.1	SLC38A4-AS1-219	572	No protein	-	lncRNA	-	-
ENST00000734177.1	SLC38A4-AS1-215	562	No protein	-	lncRNA	-	-
ENST00000734200.1	SLC38A4-AS1-238	548	No protein	-	lncRNA	-	-
ENST00000734196.1	SLC38A4-AS1-234	524	No protein	-	lncRNA	-	-
ENST00000821134.1	SLC38A4-AS1-254	502	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734212.1	SLC38A4-AS1-250	501	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000734199.1	SLC38A4-AS1-237	478	No protein	-	lncRNA	-	-
ENST00000734195.1	SLC38A4-AS1-233	451	No protein	-	lncRNA	-	-
ENST00000607353.1	SLC38A4-AS1-203	448	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000734209.1	SLC38A4-AS1-247	419	No protein	-	lncRNA	-	-
ENST00000734208.1	SLC38A4-AS1-246	407	No protein	-	lncRNA	-	-
ENST00000734197.1	SLC38A4-AS1-235	394	No protein	-	lncRNA	-	-
ENST00000734201.1	SLC38A4-AS1-239	385	No protein	-	lncRNA	-	-
ENST00000734198.1	SLC38A4-AS1-236	368	No protein	-	lncRNA	-	-
ENST00000821135.1	SLC38A4-AS1-255	357	No protein	-	lncRNA	-	-
ENST00000734210.1	SLC38A4-AS1-248	356	No protein	-	lncRNA	-	-
ENST00000821133.1	SLC38A4-AS1-253	347	No protein	-	lncRNA	-	-
ENST00000734211.1	SLC38A4-AS1-249	336	No protein	-	lncRNA	-	-
ENST00000734213.1	SLC38A4-AS1-251	283	No protein	-	lncRNA	-	-

Gene: SLC38A4-AS1 ENSG00000257261

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Gene: SLC38A4-AS1 ENSG00000257261

Summary

About Us

Get help

Our sister sites

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