Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC02546 ENSG00000255117

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Description

long intergenic non-protein coding RNA 2546 [Source:HGNC Symbol;Acc:HGNC:53581]

Location

Chromosome 11: 29,564,052-29,631,515 forward strand.

GRCh38:CM000673.2

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000742805.1	LINC02546-213	742	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661544.2	LINC02546-212	1360	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658603.1	LINC02546-207	1355	No protein	-	lncRNA		-	-
ENST00000656808.2	LINC02546-203	1255	No protein	-	lncRNA		-	-
ENST00000658163.1	LINC02546-206	1068	No protein	-	lncRNA		-	-
ENST00000660254.1	LINC02546-211	1004	No protein	-	lncRNA		-	-
ENST00000659640.1	LINC02546-209	992	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742806.1	LINC02546-214	892	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000528119.3	LINC02546-202	849	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000660023.1	LINC02546-210	829	No protein	-	lncRNA		-	-
ENST00000527492.6	LINC02546-201	742	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000656975.1	LINC02546-204	721	No protein	-	lncRNA		-	-
ENST00000657882.1	LINC02546-205	654	No protein	-	lncRNA		-	-
ENST00000659062.2	LINC02546-208	525	No protein	-	lncRNA		-	-

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Summary

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