Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
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Gene: SIRLNT ENSG00000253802

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Description

SIRT1 regulating lncRNA tumor promoter [Source:HGNC Symbol;Acc:HGNC:53902]

Gene Synonyms

LNCRNA-PRLB

Location

Chromosome 8: 40,298,697-40,373,444 reverse strand.

GRCh38:CM000670.2

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000800127.1	SIRLNT-206	1013	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000800128.1	SIRLNT-207	1080	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000800136.1	SIRLNT-215	1061	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000800129.1	SIRLNT-208	1011	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000800138.1	SIRLNT-217	1007	No protein	-	lncRNA		-	-
ENST00000654202.1	SIRLNT-204	924	No protein	-	lncRNA		-	-
ENST00000669842.2	SIRLNT-205	916	No protein	-	lncRNA		-	-
ENST00000521363.1	SIRLNT-202	881	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000800133.1	SIRLNT-212	845	No protein	-	lncRNA		-	-
ENST00000800137.1	SIRLNT-216	813	No protein	-	lncRNA		-	-
ENST00000521030.2	SIRLNT-201	786	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000800134.1	SIRLNT-213	774	No protein	-	lncRNA		-	-
ENST00000800135.1	SIRLNT-214	673	No protein	-	lncRNA		-	-
ENST00000800132.1	SIRLNT-211	668	No protein	-	lncRNA		-	-
ENST00000522486.1	SIRLNT-203	505	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000800130.1	SIRLNT-209	437	No protein	-	lncRNA		-	-
ENST00000800131.1	SIRLNT-210	387	No protein	-	lncRNA		-	-
ENST00000800140.1	SIRLNT-219	339	No protein	-	lncRNA		-	-
ENST00000800139.1	SIRLNT-218	258	No protein	-	lncRNA		-	-

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Summary

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