Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: LNCBRM ENSG00000249436

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Description

lncRNA SMARCA2 (BRM) associated [Source:HGNC Symbol;Acc:HGNC:52752]

Gene Synonyms

LINCR-0003, LNCBRM

Location

Chromosome 5: 57,574,027-57,629,629 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000718445.1	LNCBRM-214	1111	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670346.1	LNCBRM-211	3397	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660175.1	LNCBRM-205	1402	No protein	-	lncRNA		-	-
ENST00000670275.1	LNCBRM-210	1353	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664455.1	LNCBRM-207	1276	No protein	-	lncRNA		-	-
ENST00000663255.1	LNCBRM-206	1273	No protein	-	lncRNA		-	-
ENST00000654759.1	LNCBRM-203	1259	No protein	-	lncRNA		-	-
ENST00000718446.1	LNCBRM-215	1219	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670663.1	LNCBRM-212	1177	No protein	-	lncRNA		-	-
ENST00000668787.1	LNCBRM-209	1125	No protein	-	lncRNA		-	-
ENST00000667799.1	LNCBRM-208	1113	No protein	-	lncRNA		-	-
ENST00000658534.1	LNCBRM-204	1110	No protein	-	lncRNA		-	-
ENST00000509844.2	LNCBRM-201	1102	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000671639.1	LNCBRM-213	846	No protein	-	lncRNA		-	-
ENST00000513392.2	LNCBRM-202	791	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

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Summary

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