Gene: CASC16 ENSG00000249231

Description

cancer susceptibility 16 [Source:HGNC Symbol;Acc:HGNC:48608]

Gene Synonyms

LINC00918, LOC643714

Location

Chromosome 16: 52,552,055-52,652,132 reverse strand.

GRCh38:CM000678.2

About this gene

This gene has 29 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000826537.1	CASC16-208	799	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000826542.1	CASC16-213	1635	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826546.1	CASC16-217	1246	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826543.1	CASC16-214	1127	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000510238.9	CASC16-201	1050	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000826544.1	CASC16-215	1043	No protein	-	lncRNA	-	-
ENST00000826548.1	CASC16-219	1035	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826545.1	CASC16-216	1018	No protein	-	lncRNA	-	-
ENST00000671536.2	CASC16-205	1001	No protein	-	lncRNA	-	-
ENST00000826547.1	CASC16-218	976	No protein	-	lncRNA	-	-
ENST00000826556.1	CASC16-227	961	No protein	-	lncRNA	-	-
ENST00000652959.1	CASC16-204	937	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826549.1	CASC16-220	913	No protein	-	lncRNA	-	-
ENST00000565755.2	CASC16-203	866	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000826535.1	CASC16-206	847	No protein	-	lncRNA	-	-
ENST00000826555.1	CASC16-226	811	No protein	-	lncRNA	-	-
ENST00000826557.1	CASC16-228	793	No protein	-	lncRNA	-	-
ENST00000826550.1	CASC16-221	785	No protein	-	lncRNA	-	-
ENST00000826553.1	CASC16-224	782	No protein	-	lncRNA	-	-
ENST00000826558.1	CASC16-229	762	No protein	-	lncRNA	-	-
ENST00000826552.1	CASC16-223	756	No protein	-	lncRNA	-	-
ENST00000826539.1	CASC16-210	738	No protein	-	lncRNA	-	-
ENST00000826541.1	CASC16-212	732	No protein	-	lncRNA	-	-
ENST00000826538.1	CASC16-209	692	No protein	-	lncRNA	-	-
ENST00000826540.1	CASC16-211	684	No protein	-	lncRNA	-	-
ENST00000826536.1	CASC16-207	681	No protein	-	lncRNA	-	-
ENST00000563844.1	CASC16-202	610	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000826551.1	CASC16-222	593	No protein	-	lncRNA	-	-
ENST00000826554.1	CASC16-225	498	No protein	-	lncRNA	-	-

Gene: CASC16 ENSG00000249231

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Gene: CASC16 ENSG00000249231

Summary

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